My Pumpkin Cream Cheese Muffins are stuffed with a cream cheese filling and topped with my easy (no pastry cutter needed) streusel. Theyโre perfectly spiced and moistโsuch a fun fall breakfast treat! Recipe includes a how-to video!

Cream Cheese-Stuffed Pumpkin Muffins
If you thought you loved my regular pumpkin muffins, just wait until you try this cream cheese-stuffed version! These pumpkin cream cheese muffins are perfected to be moist, not too sweet, and just the right amount of indulgent (although Iโm 100% unopposed to eating sweets for breakfast; have you seen my pumpkin coffee cake?!). The very best part is whatโs inside:ย a sweet, cheesecake-inspired surprise that you wouldnโt suspect from the outside.
The second-best part of this recipe is the streusel topping. Not only is it buttery, spiced, and sweet, but itโs also incredibly EASY, thanks to my favorite no-pastry cutter technique. Youโll never make streusel the old way again!
Why youโll love my recipe:
- Fastโtakes less than an hour to make.
- Has that bakery flavor and look you love (especially in my parchment paper liners).
- Tastes like a pumpkin roll in muffin formโฆyum!
- Uses my easy streusel, which means thereโs no pastry cutter needed!
What You Need

Hereโs what you need to make these moist, cream cheese-stuffed pumpkin muffins:
- Brown sugar. I recommend using either all light brown sugar or a mix of dark and light. Using all dark brown sugar will make your muffins too sweet/rich (and thatโs coming from someone who used to think sugar cubes counted as a snack).
- Butter. Use unsalted butter in the muffins (since we add salt ourselves) but you can use salted butter in the streusel since its such a small amount.
- Pumpkin. Make sure you are using 100% pure pumpkin and NOT pumpkin pie filling!
- Pumpkin pie spice. If you donโt have any on hand, give my homemade pumpkin spice a try.
- Cream cheese. Brick-style, full-fat cream cheese is the only kind I recommend here.
SAMโS TIP: Because of the heavy cream cheese layer in the center, these muffins have a tendency to deflate a bit after baking. Thatโs not really a problem (unless you are some sort of muffin-top purist), but I do take a few measures to prevent this: making sure to add enough muffin batter over the top of the cream cheese filling to cover it entirely, and using a spoon to make sure the edges around the cream cheese are filled in as well.
Remember, this is just an overview of the ingredients I used and why. For the full recipe please scroll down to the bottom of the post!
How to Make Them



First, weโll prepare our cheesecake filling and muffin batter:
- Combine cream cheese, sugar, and vanilla until smooth. Set aside.
- Cream together the butter and sugars, then add the eggs.
- Stir in the pumpkin and vanilla, then add the milk.
- Combine the dry ingredients in a separate bowl, then gradually fold them into the wet ingredients.
- Portion 2 tablespoons of muffin batter into cupcake liners and create a small divot in each muffin with a spoon.
- Top each muffin with 1 tablespoon of cheesecake filling, then top with more batter.

Then weโll preparing our streusel (itโs so easy!) and bake:
- Combine the flours, sugar, and cinnamon.
- Add the melted butter, then toss with a fork to create a clumpy mixture.
- Evenly distribute over muffins, pressing slightly into the tops as you go.
- Bake for 23-25 minutes and let cool in the pan for 10-12 minutes before removing to a cooling rack.
SAMโS TIP: I like aย lot of streusel on my muffins, so much that my beloved apple muffins usually get complaints because the recipe makes so much streuselโbut I use every bit of it! To appease those of you who are less streusel-friendly, I cut the recipe in half for these muffins, but if youโre a streusel fiend like meโฆyou know what to do.

Frequently Asked Questions
Youโll want to store your muffins in an airtight container in the refrigerator where they will keep for 2-3 days.
These pumpkin cream cheese muffins should hold up well in the freezer. Just make sure to wrap them really well and store in an airtight container.
If your muffins are dry, itโs likely the batter was accidentally over-mixed. This is easy to do with quick breads, so make sure to switch to a spatula when you combine the wet and dry ingredients and stir until just combined. However, note that baking the muffins even a minute or two too long can also result in dense, dry muffins!

I donโt know about you, but a hidden cheesecake filling might just be my favorite kind of surprise ๐. If youโre a fan, too, youโll probably also enjoy my blueberry cream cheese muffins and my chocolate cheesecake muffins!
Enjoy!
Letโs bake together!ย Iโll be walking you through all the steps in my written recipe andย videoย below! If you try this recipe, be sure to tag me onย Instagram, and you can also find me onย YouTubeย andย Facebook

Pumpkin Cream Cheese Muffins
Ingredients
Cream Cheese Filling
- 8 ounces (225 g) cream cheese softened to room temperature
- โ cup (65 g) granulated sugar
- ยฝ teaspoon vanilla extract
Pumpkin Muffins
- ยพ cup (165 g) butter softened
- ยฝ cup (100 g) sugar
- ยผ cup (50 g) brown sugar packed
- 2 large eggs (room temperature preferred)
- 1 cup (225 g) pumpkin puree
- 1 ยฝ teaspoon vanilla extract
- 2 Tablespoons (30 ml) whole milk
- 1 ยผ cup (150 g) all-purpose flour
- 2 teaspoons pumpkin spice
- ยฝ teaspoon ground cinnamon
- ยพ teaspoon baking powder
- ยพ teaspoon baking soda
- ยฝ teaspoon salt
Streusel
- ยฝ cup (63 g) all-purpose flour
- โ cup (67 g) light brown sugar firmly packed
- 1 Tablespoon granulated sugar
- ยพ teaspoon ground cinnamon
- 3 Tablespoons butter (salted or unsalted is fine), melted
Recommended Equipment
Instructions
- Preheat oven to 375F (190C) and line a 12 count muffin tin with paper liners.
Cream Cheese Filling
- Place cream cheese in a mixing bowl and stir until smooth. Add granulated sugar and vanilla and stir until creamy and completely combined. Set aside.8 ounces (225 g) cream cheese, โ cup (65 g) granulated sugar, ยฝ teaspoon vanilla extract
Muffins
- In a medium-sized bowl, use an electric mixer to cream together softened butter and sugars until well-creamed. ยยพ cup (165 g) butter, ยฝ cup (100 g) sugar, ยผ cup (50 g) brown sugar
- Add eggs and beat until combined.2 large eggs
- Stir in pumpkin puree and vanilla extract until combined, then add milk and stir well. Be sure to scrape down the sides and bottom of the bowl to ensure that all ingredients are well combined.1 cup (225 g) pumpkin puree, 1 ยฝ teaspoon vanilla extract, 2 Tablespoons (30 ml) whole milk
- In a separate, medium-sized bowl, whisk together flour, pumpkin spice, cinnamon, baking powder, baking soda, and salt.1 ยผ cup (150 g) all-purpose flour, 2 teaspoons pumpkin spice, ยฝ teaspoon ground cinnamon, ยพ teaspoon baking powder, ยพ teaspoon baking soda, ยฝ teaspoon salt
- Using a spatula, gradually add dry ingredients and wet and stir until just combined โ do not over-mix!
- Portion about 2 tablespoons of pumpkin muffin batter into the bottom of each muffin liner. Use the back of a spoon to make a small crater/nest in the center of the batter. ย
- Drop a heaping tablespoon of cream cheese filling into the nests you've created then drop/smooth more pumpkin muffin batter overtop, taking care to completely cover the cream cheese and filling liners ยพ of the way full.
Streusel
- Whisk together flour, sugars, and ground cinnamon until combined.ยฝ cup (63 g) all-purpose flour, โ cup (67 g) light brown sugar, 1 Tablespoon granulated sugar, ยพ teaspoon ground cinnamon
- Add melted butter and toss/claw together ingredients until clumpy.3 Tablespoons butter
- Evenly divide streusel over pumpkin batter.
- Transfer muffins to 375F (190C) preheated oven and bake for 23-25 minutes or until tops are beginning to turn golden brown and a toothpick inserted in the center comes out with dry pumpkin muffin crumbs.ย
- Allow to cool before serving.
Notes
Storing
Store leftovers in an airtight container in the refrigerator for up to 2 days.Nutrition
Nutritional information is based on third-party calculations and should be considered an estimate only. Actual nutritional content will vary based upon brands used, measuring methods, cooking method, portion sizes, and more.
Chloe
Best muffin recipe Iโve ever tried! Absolutely delicious & not too complicated. Thank you!
Sharon Mullin
Can I use mini Bundt pans and fill with cream cheese. I canโt use strudel. Can I put it in the pans first then batter, cream cheese and batter?
Sam
Hi Sharon! I havenโt tried it in mini bundt pans so I canโt say for sure how it would work.
Min
Excellent! A cross between a muffin and a cupcake. What a delightful breakfast treat.
Emily @ Sugar Spun Run
Thanks for giving them a try, Min! Weโre so happy you liked the muffins ๐งก
AH
Amazing and thoughtfully constructed recipe! Used Bobโs Red Mill Egg Replacer and still came out perfect. Thank you!
Emily @ Sugar Spun Run
Thanks for letting us know how that worked for you! Enjoy ๐ฅฐ
Mary Wrede
Can these be made in jumbo baking pan?
Emily @ Sugar Spun Run
Yes! Your baking time will be different though ๐
Amanda
This is such a great recipe! I followed it exactly and it ended up making 15 cupcakes. They were so moist, tender and flavorful. Perfect pumpkin muffins! Thank you for sharing!
Sam
Iโm so glad you enjoyed them so much, Amanda! ๐
Catherine Dobbs
these were so delicious. do they have to be refrigerated if youโre going to eat them the next day? Thank you so much
Sam
Hi Catherine! You will want to refrigerate these in an air tight container.
MH
hello. thank you what a great recipe. would it be okay if I just halved the recipe to make 6 muffins instead?thanks in advance
Emily @ Sugar Spun Run
Some of the measurements could get tricky, but it can be done ๐
Olivia
hi there! how would you recommend I should adjust cook time if I wanted to bake them in a jumbo muffin tin instead? thanks!
Sam
Hi Olivia! I havenโt tried it so I canโt say for sure what the bake time would be. Iโm also not sure how they would hold up being baked as jumbo muffins. If you do try it I would love to know how they turn out.
Holly
Absolutely delicious